Usage

Usages on 'Menu', 'Interface' and 'Model are for the standalone program. Usage on 'Web-Service Developer's Guide' is for web-application program.

Menu

Interface

Model setting

Web-Service Developer's Guide

	We support web service of FSFinder. Developers can use FSFinder web service with following documents.
	Download documents
-		FSFinder web service WSDL
-		Example of request SOAP message
-		Example of response SOAP message
	Related documents
-		W3C - Web Service Activity
-		W3C - XML Protocol Working Group
-		msdn - Web Service developer center
-		msdn - How to send and receive a SOAP message
-		Sun - Java technology and web services
-		Perl - Creating web services with XML-RPC
	String formats of xml elements in regular expression
		<Sequence_information> <Target_gene> dnaX gene | prfB gene | genes in viruses | other genes in bacteria <Sequence_size> Full | Patial <Sequence_direction> Plus strand | Minus strand <Sequence> [ agctunAGCTUN]+ <FSFinder_Model> Overlap_with (Attribute) -1 | +1 | -+1 <Components> <Components type> Spacer (Attribute) [0-9]([\t\f]*~[\t\f]*[0-9])? <Pattern_type> <Pattern> [,a-zA-Z]+ <Pattern_match> [,agcturymkswhbydnAGCTURYMKSWHBVDN]+ <Exceptions> <Exception> [,agcturymkswhbydnAGCTURYMKSWHBVDN]+ <RNA_structure_type> Structure (Attribute) StemLoop|Pseudoknot|StemLoop;Pseudoknot <Signal_type> <Signals> <Signal> [,agcturymkswhbydnAGCTURYMKSWHBVDN]+ <Counter_type> <Counters> <Counter> [agcturymkswhbydnAGCTURYMKSWHBVDN][\t\f]*[>=<][\t\f]*[0-9]+