Examples
User interface of web-service Examples Results
The input page (left) and result page (right) of FSFinder2.
Left: A. The select option lets the user choose the type of genes expressed via frameshifts, the size of the sequence and its direction.
B, C. The user can define a new model by specifying its components and their locations.
D. The user selects the input sequence file.
Right: E. This box gives the file name of the input sequence, target gene, sequence size and direction.
F. This shows potential frameshift sites found by FSFinder2 for each model in the model list.
G. The results are separated into exact matches and partial matches in each of the overlapping and non-overlapping regions.
H. The results are grouped into model types, frames containing the frameshift sites and the overlapping regions of ORFs. FSFinder2 displays the locations and lengths of the overlapping ORFs. The match column shows the number of matched components out of the total components in the model. The signal column presents matched components and sequences. The matched parts in the signal are highlighted in the color defined by the user. Yellow, green, sky blue and red designate pattern type, RNA structure, signal type and counter type, respectively. The red numbers above the sequence designate the position of the component with respect to the first nucleotide of the sequence.