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Table 1. Frameshift signals in RECODE with downstream
stem-loops and X XXY YYG slippery sequences. * indicates frameshift signals
that were not identified by FSFinder because the slippery sequence does not
conform to the motif X XXY YYZ. |
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Table 2.
Prediction results for - 1 frameshift sequences in PseudoBase and RECODE. *
indicates a frameshift signal missed by FSFinder due to a slippery sequence not
conforming to the motif X XXY YYZ. TE: transposable element. TP: true
positives, TN: true negatives, FP: false positives, FN: false negatives.
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Table 3.
Prediction results for +1 frameshift signals in RECODE.
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Table 4. Prediction results of frameshift sequences in the
overlapping and nonoverlapping regions of five microbial genomes:
Chlamydophila pneumoniae AR39 (gi:16751970, 1,229,858 bp), Chlorobium
tepidum TLS (gi: 21672841, 2,154,946 bp), Escherichia coli
K12 (gi: 16127994, 4,639,221 bp), Streptococcus pneumoniae
TIGR4 (gi: 15899949, 2,160,837), Borrelia burgdoferi B31
(gi:15594346, 910,724 bp)
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Table 5. Prediction results of +1 frameshift sequences of
RF2 gene in bacterial genome.
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Table 6. Descriptions in the GenBank file. PFS: programmed frameshifts.
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Table 7. Frameshift sites found by FSFinder2. FS: frameshift sites.
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